PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G239000.2
Common NameB456_001G239000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 226aa    MW: 25724.6 Da    PI: 5.3633
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G239000.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.31.8e-089332348
                        -HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48
                        +W++Ia++++  Rt++++k++w+++l
  Gorai.001G239000.2  9 RWAAIASYLP-ERTDNDIKNYWNTHL 33
                        6*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.538137IPR017930Myb domain
SuperFamilySSF466897.8E-8739IPR009057Homeodomain-like
PfamPF002498.8E-7933IPR001005SANT/Myb domain
CDDcd001673.68E-6933No hitNo description
Gene3DG3DSA:1.10.10.601.0E-11941IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001666Biological Processresponse to hypoxia
GO:0009617Biological Processresponse to bacterium
GO:0009626Biological Processplant-type hypersensitive response
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0042761Biological Processvery long-chain fatty acid biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MGGIYYCYRW AAIASYLPER TDNDIKNYWN THLKKKLQGN ESSSRYGFPS SSSSYQICRG  60
QWERKLQTDI HMAKKDLSDA LSPEKSSDLV EMKPFNNHTS SPKPSGYASS TENIAKLLKG  120
WMRNNPWKMA DSADYSEEGT VPMKEDKNSK EMAEAFQSHL GFESLDSSLS DISPSMSPET  180
SLSQYESKPH LNAQSQLSLL EKWLFDEGKD YQLCDITLDQ NLYFF*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00386DAPTransfer from AT3G28910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ1182430.0DQ118243.1 Gossypium hirsutum myb transcription factor MYB30 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012441068.11e-158PREDICTED: myb-related protein 306
SwissprotQ9SCU78e-45MYB30_ARATH; Transcription factor MYB30
TrEMBLA0A0D2NDI91e-167A0A0D2NDI9_G
STRINGPOPTR_0004s12530.11e-60(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28910.13e-43myb domain protein 30
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]